| Module – 6 months | Nucleic Acids MODELING & SIMULATION |
| Topics |
– Protein Data Bank (PDB), Nucleic Acid Data Bank (NDB) RCSB, UNIPROT -Introduction to various sequence Databases – Studying Sequence and 2D and 3D structure of DNA/RNA -Learning Visualization tools (Rasmol and Pymol) -Studying Various Motifs in RNA structures – Analyzing H-bonding and Stacking between Nucleobases in RNA – Modeling 3D structure of DNA/RNA – Molecular Dynamics Simulations – Simulation using GROMACS -Analyzing Results – Writing Report |